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All three confirmed real on inspection.
1. nomarchy-refresh-config was dead on every system: it read
/etc/nixos/nomarchy/{core/home/config,features} (the source tree never
lands there — only /etc/nomarchy on VM-guest/live ISO) and fell back to
~/.local/share/nomarchy/config, which nothing deployed despite SKILL.md
documenting it. Deploy the pristine core/home/config tree to
~/.local/share/nomarchy/config via xdg.dataFile and read from there, so it
works without a source checkout; its live caller nomarchy-refresh-fastfetch
now succeeds. Fix two stale SKILL.md examples (waybar/, hypr/) that pointed
at non-existent stock paths.
2. nomarchy-docs-scripts shipped a stale divergent copy in
features/scripts/utils/ (in the user nomarchy-system-scripts package)
beside the canonical bin/utils dev tool — it errored outside the repo.
Grounding it surfaced the identical bug in nomarchy-docs-keybindings.
Delete both duplicates, add them to the generator's self-reference
denylist so they don't show as false `missing`, regenerate docs/SCRIPTS.md.
3. Home ~/.config/nomarchy/state.json was never seeded on non-installer
systems, so nomarchy-installed-summary rendered "—" for theme/font/panel.
Add an idempotent home-manager activation seed in core/home/state.nix that
backfills the resolved values (defaults * existing — user choices and
runtime-only keys like welcome_done always win).
Verified: flake check + full eval matrix clean; refresh-config happy/error
paths and the seed deep-merge proven by hand.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>