fix: ground + fix three Pillar-9 candidate bugs from the script sweep

All three confirmed real on inspection.

1. nomarchy-refresh-config was dead on every system: it read
   /etc/nixos/nomarchy/{core/home/config,features} (the source tree never
   lands there — only /etc/nomarchy on VM-guest/live ISO) and fell back to
   ~/.local/share/nomarchy/config, which nothing deployed despite SKILL.md
   documenting it. Deploy the pristine core/home/config tree to
   ~/.local/share/nomarchy/config via xdg.dataFile and read from there, so it
   works without a source checkout; its live caller nomarchy-refresh-fastfetch
   now succeeds. Fix two stale SKILL.md examples (waybar/, hypr/) that pointed
   at non-existent stock paths.

2. nomarchy-docs-scripts shipped a stale divergent copy in
   features/scripts/utils/ (in the user nomarchy-system-scripts package)
   beside the canonical bin/utils dev tool — it errored outside the repo.
   Grounding it surfaced the identical bug in nomarchy-docs-keybindings.
   Delete both duplicates, add them to the generator's self-reference
   denylist so they don't show as false `missing`, regenerate docs/SCRIPTS.md.

3. Home ~/.config/nomarchy/state.json was never seeded on non-installer
   systems, so nomarchy-installed-summary rendered "—" for theme/font/panel.
   Add an idempotent home-manager activation seed in core/home/state.nix that
   backfills the resolved values (defaults * existing — user choices and
   runtime-only keys like welcome_done always win).

Verified: flake check + full eval matrix clean; refresh-config happy/error
paths and the seed deep-merge proven by hand.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

docs/SCRIPTS.md

@@ -24,7 +24,7 @@ Phase B (per-batch PRs) refines those into `port-from-omarchy`,
 - `delete-dead` — Phase B verdict: remove and update callers.
 - `stub-with-notify` — Phase B verdict: temporary `notify-send` stub.
 
-## Scripts (160)
+## Scripts (158)
 
 | Script | Location | Callers | Status | Notes |
 | --- | --- | --- | --- | --- |
@@ -47,8 +47,6 @@ Phase B (per-batch PRs) refines those into `port-from-omarchy`,
 | `nomarchy-cmd-share` | `features/scripts/utils` | features/scripts/utils/nomarchy-menu | `kept` |  |
 | `nomarchy-cmd-terminal-cwd` | `features/scripts/utils` | features/desktop/hyprland/config/bindings.conf | `kept` |  |
 | `nomarchy-debug` | `features/scripts/utils` | core/home/config/nomarchy-skill/SKILL.md | `kept` |  |
-| `nomarchy-docs-keybindings` | `features/scripts/utils` | bin/utils/nomarchy-docs-keybindings | `kept` |  |
-| `nomarchy-docs-scripts` | `features/scripts/utils` | bin/utils/nomarchy-docs-scripts | `kept` |  |
 | `nomarchy-drive-info` | `features/scripts/utils` | features/scripts/utils/nomarchy-drive-select | `kept` |  |
 | `nomarchy-drive-select` | `features/scripts/utils` | features/scripts/utils/nomarchy-drive-info,features/scripts/utils/nomarchy-drive-set-password | `kept` |  |
 | `nomarchy-drive-set-password` | `features/scripts/utils` | features/scripts/utils/nomarchy-drive-select,features/scripts/utils/nomarchy-menu | `kept` |  |
@@ -57,7 +55,7 @@ Phase B (per-batch PRs) refines those into `port-from-omarchy`,
 | `nomarchy-font-current` | `themes/engine/scripts` | core/home/config/nomarchy-skill/SKILL.md,features/scripts/utils/nomarchy-menu | `kept` |  |
 | `nomarchy-font-list` | `themes/engine/scripts` | core/home/config/nomarchy-skill/SKILL.md,features/scripts/utils/nomarchy-font, +2 more | `kept` |  |
 | `nomarchy-font-set` | `themes/engine/scripts` | core/home/config/nomarchy-skill/SKILL.md,features/scripts/utils/nomarchy-font, +4 more | `kept` |  |
-| `nomarchy-haptic-touchpad` | `core/system/scripts` | core/system/hardware.nix | `kept` |  |
+| `nomarchy-haptic-touchpad` | `core/system/scripts` | core/system/hardware.nix,core/system/scripts-derivation.nix | `kept` |  |
 | `nomarchy-hibernation-available` | `core/system/scripts` | features/scripts/utils/nomarchy-menu | `kept` |  |
 | `nomarchy-hibernation-remove` | `core/system/scripts` | features/scripts/utils/nomarchy-menu | `kept` |  |
 | `nomarchy-hibernation-setup` | `core/system/scripts` | features/scripts/utils/nomarchy-menu | `kept` |  |
@@ -74,7 +72,7 @@ Phase B (per-batch PRs) refines those into `port-from-omarchy`,
 | `nomarchy-hyprland-workspace-layout-toggle` | `features/scripts/utils` | core/home/config/nomarchy/default/hypr/bindings/tiling-v2.conf,features/scripts/utils/nomarchy-menu | `kept` |  |
 | `nomarchy-install` | `features/scripts/utils` | README.md,core/home/config/nomarchy-skill/SKILL.md, +2 more | `kept` |  |
 | `nomarchy-install-docker-dbs` | `features/scripts/utils` | core/home/config/nomarchy-skill/SKILL.md | `kept` |  |
-| `nomarchy-installed-summary` | `features/scripts/utils` | features/scripts/utils/nomarchy-welcome | `kept` |  |
+| `nomarchy-installed-summary` | `features/scripts/utils` | core/home/state.nix,features/scripts/utils/nomarchy-welcome | `kept` |  |
 | `nomarchy-launch-about` | `features/scripts/utils` | features/scripts/utils/nomarchy-menu | `kept` |  |
 | `nomarchy-launch-audio` | `features/scripts/utils` | core/home/config/nomarchy/default/hypr/bindings/utilities.conf,features/desktop/waybar/config/config.jsonc, +2 more | `kept` |  |
 | `nomarchy-launch-bluetooth` | `features/scripts/utils` | core/home/config/nomarchy/default/hypr/bindings/utilities.conf,features/desktop/waybar/config/config.jsonc, +1 more | `kept` |  |
@@ -91,7 +89,7 @@ Phase B (per-batch PRs) refines those into `port-from-omarchy`,
 | `nomarchy-launch-wifi` | `features/scripts/utils` | core/home/config/nomarchy/default/hypr/bindings/utilities.conf,core/home/config/nomarchy/default/mako/core.ini, +4 more | `kept` |  |
 | `nomarchy-lock-screen` | `features/scripts/utils` | core/home/config/nomarchy-skill/SKILL.md,core/home/config/nomarchy/default/hypr/bindings/utilities.conf, +3 more | `kept` |  |
 | `nomarchy-manual` | `features/scripts/utils` | core/branding/about.txt,features/scripts/utils/nomarchy-menu, +1 more | `kept` |  |
-| `nomarchy-menu` | `features/scripts/utils` | README.md,bin/utils/nomarchy-docs-scripts, +9 more | `kept` |  |
+| `nomarchy-menu` | `features/scripts/utils` | README.md,bin/utils/nomarchy-docs-scripts, +8 more | `kept` |  |
 | `nomarchy-menu-keybindings` | `features/scripts/utils` | core/home/config/nomarchy-skill/SKILL.md,core/home/config/nomarchy/default/hypr/bindings/utilities.conf, +2 more | `kept` |  |
 | `nomarchy-notification-dismiss` | `features/scripts/utils` | core/home/config/nomarchy/default/mako/core.ini | `kept` |  |
 | `nomarchy-on-boot` | `features/scripts/utils` | core/home/config/nomarchy/default/hypr/autostart.conf | `kept` |  |
@@ -102,7 +100,7 @@ Phase B (per-batch PRs) refines those into `port-from-omarchy`,
 | `nomarchy-pkg-remove` | `features/scripts/utils` | features/scripts/utils/nomarchy-pkg-drop | `kept` |  |
 | `nomarchy-powerprofiles-list` | `core/system/scripts` | features/scripts/utils/nomarchy-menu | `kept` |  |
 | `nomarchy-preflight-migration` | `features/scripts/utils` | features/scripts/utils/nomarchy-env-update | `kept` |  |
-| `nomarchy-refresh-config` | `features/scripts/utils` | core/home/config/nomarchy-skill/SKILL.md,features/scripts/utils/nomarchy-refresh-fastfetch | `kept` |  |
+| `nomarchy-refresh-config` | `features/scripts/utils` | core/home/config/nomarchy-skill/SKILL.md,core/home/configs.nix, +1 more | `kept` |  |
 | `nomarchy-refresh-fastfetch` | `features/scripts/utils` | core/home/config/nomarchy-skill/SKILL.md | `kept` |  |
 | `nomarchy-refresh-hyprland` | `features/scripts/utils` | core/home/config/nomarchy-skill/SKILL.md | `kept` |  |
 | `nomarchy-refresh-waybar` | `features/scripts/utils` | core/home/config/nomarchy-skill/SKILL.md | `kept` |  |
@@ -144,14 +142,14 @@ Phase B (per-batch PRs) refines those into `port-from-omarchy`,
 | `nomarchy-theme` | `features/scripts/utils` | README.md,bin/utils/nomarchy-docs-scripts, +17 more | `kept` |  |
 | `nomarchy-theme-bg-install` | `themes/engine/scripts` | core/home/config/nomarchy-skill/SKILL.md | `kept` |  |
 | `nomarchy-theme-bg-next` | `themes/engine/scripts` | README.md,core/home/config/nomarchy-skill/SKILL.md, +1 more | `kept` |  |
-| `nomarchy-theme-bg-set` | `themes/engine/scripts` | core/home/config/nomarchy/default/elephant/nomarchy_background_selector.lua,features/scripts/utils/nomarchy-wallpaper | `kept` |  |
+| `nomarchy-theme-bg-set` | `themes/engine/scripts` | features/apps/elephant/config/menus/nomarchy_background_selector.lua,features/scripts/utils/nomarchy-wallpaper | `kept` |  |
 | `nomarchy-theme-current` | `themes/engine/scripts` | core/home/config/nomarchy-skill/SKILL.md,themes/engine/scripts/nomarchy-theme-next | `kept` |  |
 | `nomarchy-theme-install` | `themes/engine/scripts` | core/home/config/nomarchy-skill/SKILL.md | `kept` |  |
 | `nomarchy-theme-list` | `themes/engine/scripts` | core/home/config/nomarchy-skill/SKILL.md,features/scripts/utils/nomarchy-theme, +2 more | `kept` |  |
 | `nomarchy-theme-next` | `themes/engine/scripts` | core/home/config/nomarchy-skill/SKILL.md | `kept` |  |
 | `nomarchy-theme-refresh` | `themes/engine/scripts` | core/home/config/nomarchy-skill/SKILL.md | `kept` |  |
 | `nomarchy-theme-remove` | `themes/engine/scripts` | core/home/config/nomarchy-skill/SKILL.md | `kept` |  |
-| `nomarchy-theme-set` | `themes/engine/scripts` | core/home/config/nomarchy-skill/SKILL.md,core/home/config/nomarchy/default/elephant/nomarchy_themes.lua, +9 more | `kept` |  |
+| `nomarchy-theme-set` | `themes/engine/scripts` | core/home/config/nomarchy-skill/SKILL.md,features/apps/elephant/config/menus/nomarchy_themes.lua, +9 more | `kept` |  |
 | `nomarchy-theme-set-keyboard` | `themes/engine/scripts` | features/scripts/utils/nomarchy-on-boot | `kept` |  |
 | `nomarchy-theme-set-keyboard-asus-rog` | `themes/engine/scripts` | features/scripts/utils/nomarchy-on-boot,themes/engine/scripts/nomarchy-theme-set-keyboard | `kept` |  |
 | `nomarchy-theme-set-keyboard-f16` | `themes/engine/scripts` | features/scripts/utils/nomarchy-on-boot,themes/engine/scripts/nomarchy-theme-set-keyboard | `kept` |  |